Chung-Yuan Huang（黃崇源），長庚大學資訊工程學系教授，個人官方網站大頭照

長庚大學 黃崇源 教授Prof. Chung-Yuan Huang

複雜適應性網絡與系統實驗室 主持人Director, Complex Adaptive Networks and Systems Lab

責任與肯定Commitment and Recognition

    杏壇芬芳錄推薦文Recommendation for Taipei Honored Contributors to Education

    表現與成就Performance and Achievements

    開源程式 Open-Source Software

    以下為黃崇源教授及 CANS 實驗室團隊所開發的研究軟體與工具，所有程式碼皆以 MIT 授權公開於 GitHub，歡迎學術研究與教學使用。 The following research software and tools were developed by Prof. Chung-Yuan Huang and the CANS Lab team. All source code is released under the MIT License on GitHub for academic research and educational use.

    • EpiRank

      基於非對稱通勤網絡的疫情風險分析桌面應用程式。借鏡 Google PageRank 的哲學，EpiRank 同時模擬通勤的去程與回程方向，僅需單一通勤 OD 矩陣即可預測流感、腸病毒、SARS 三種疾病在臺灣 353 個鄉鎮的空間風險分布。 A desktop application for epidemic risk analysis across Taiwan's 353 townships based on asymmetric commuting networks. Inspired by Google's PageRank, EpiRank simultaneously models forward and return commuting trips to predict the spatial risk distribution of Influenza, Enterovirus, and SARS using a single commuting OD matrix.

      Epidemic Simulation PageRank Commuting Network Python GUI
      EpiRank sensitivity analysis heatmaps for damping factor and daytime parameter EpiRank vs actual disease core classification stacked bar charts Taiwan commuter flow network visualization and statistics EpiRank paper first page — Scientific Reports 2019
      論文：Paper: Huang, C.-Y., Chin, W. C. B., Wen, T.-H., Fu, Y.-H., & Tsai, Y.-S. (2019). EpiRank: Modeling Bidirectional Disease Spread in Asymmetric Commuting Networks. Scientific Reports, 9, 5415. doi:10.1038/s41598-019-41719-8
      GitHub Repository → · MIT License

    • MV17 — Network Spreader Analysis Tool

      結合全域多樣性（k-shell 熵）與局部拓撲特徵的關鍵傳播者辨識工具。MV17 提出兩階段框架，先以 k-shell 分解定位節點的全域位置，再以鄰居核心值衡量局部連結品質，穩健地排序網絡中最具影響力的傳播節點。內建 11 種中心性指標比較、SIR 蒙地卡羅模擬驗證（5,000 輪）、散佈矩陣相關分析，以及 29 個經典與真實網絡資料集。 A GUI application for identifying influential spreaders in complex networks by combining global diversity (k-shell entropy) and local topology features. MV17 employs a two-step framework: first locating a node's global position via k-shell decomposition, then measuring local connection quality through neighbor coreness. Features 11 built-in centrality measures, SIR Monte Carlo validation (5,000 rounds), scatter matrix correlation analysis, and 29 classical and real-world network datasets.

      Network Analysis Influential Spreaders K-Shell Decomposition SIR Simulation Python GUI + CLI
      MV17 K-Core Visualization of dolphins network with color-coded k-core numbers MV17 Node Attributes table showing 11 centrality measures and neighbor degree distribution MV17 scatter matrix showing pairwise correlations between centrality measures MV17 paper first page — Physica A 2015
      論文：Paper: Fu, Y.-H., Huang, C.-Y., & Sun, C.-T. (2015). Using global diversity and local topology features to identify influential network spreaders. Physica A: Statistical Mechanics and its Applications, 433, 344–355. doi:10.1016/j.physa.2015.03.042
      GitHub Repository → · MIT License

    • CASMIM — SARS Epidemic Simulation

      結合細胞自動機與社會鏡像身份機制的 SARS 疫情模擬模型。每個人在 500×500 環面格網上擁有多個「社會分身」，代表其在不同社交場域（家庭、工作場所、醫院等）的存在。模型使用 SEIR+D 分室架構，搭配 8 項可動態啟停的公共衛生政策、BFS 接觸者追蹤、超級傳播者建模及年齡分層死亡率，可模擬新加坡、臺北和多倫多的 SARS 疫情情境。 A small-world epidemiological simulation model combining cellular automata with a "social mirror identity" mechanism for SARS transmission dynamics. Each person owns multiple agents scattered across a 500×500 torus lattice, representing their presence in different social spheres. Uses an SEIR+D compartmental framework with 8 dynamically toggleable public health policies, BFS-based contact tracing, super-spreader modeling, and age-stratified mortality.

      Epidemic Simulation SARS Cellular Automata SEIR Model Agent-Based Model Python GUI
      CASMIM lattice model with color-coded susceptible, incubation, and infected agent states Social mirror identity concept — individuals distributed across home, office, school bus, and other social spheres CASMIM GUI screenshot with 500×500 macro lattice view and policy controls CASMIM paper first page — SIMULATION 2005
      論文：Paper: Huang, C.-Y., Sun, C.-T., Hsieh, J.-L., Chen, Y.-M. A., & Lin, H. (2005). A Novel Small-World Model: Using Social Mirror Identities for Epidemic Simulations. SIMULATION, 81(10), 671–699. doi:10.1177/0037549705061519
      論文：Paper: Huang, C.-Y., Sun, C.-T., Hsieh, J.-L., & Lin, H. (2004). Simulating SARS: Small-World Epidemiological Modeling and Public Health Policy Assessments. Journal of Artificial Societies and Social Simulation, 7(4), 2. JASSS 7(4)
      GitHub Repository → · MIT License

    • HETA — Hierarchical Edge Type Analysis

      無參數的複雜網絡邊分類工具。HETA 純粹依據網絡拓撲結構，將每條邊分類為 BOND、SINK、LOCAL BRIDGE 或 GLOBAL BRIDGE 四種類型，無需預先定義社群標籤或邊權重。支援 PySide6 圖形介面與命令列雙模式。 A parameter-free tool for classifying every edge in a complex network into one of four structural types (BOND, SINK, LOCAL BRIDGE, GLOBAL BRIDGE) driven entirely by network topology, without requiring pre-defined community labels or edge weights. Offers both a PySide6 GUI and a full-featured CLI.

      Network Analysis Edge Classification Complex Networks Python GUI + CLI
      HETA edge type classification: Silk, Bond, Local Bridge, Global Bridge on example network HETA community detection on 4 real-world networks: rdgam, women, camp92, karate HETA link type analysis applied to 16 benchmark networks HETA paper first page — Physica A 2019
      論文：Paper: Huang, C.-Y., Chin, W. C. B., Fu, Y.-H., & Tsai, Y.-S. (2019). Beyond bond links in complex networks: Local bridges, global bridges and silk links. Physica A: Statistical Mechanics and its Applications, 536, 121027. doi:10.1016/j.physa.2019.04.263
      GitHub Repository → · MIT License

    • HATA — Hierarchical Arc Type Analysis

      有向網絡弧分類工具。HATA 將 HETA 框架擴展至有向圖，以方向性自我網絡取代「共同朋友」概念，將每條有向弧分類為 BOND、Silk、Local Bridge 或 Global Bridge。 A tool for classifying directed arcs in complex networks into four hierarchical types (BOND, Silk, Local Bridge, Global Bridge). HATA extends the HETA framework to directed networks by replacing the "common friends" concept with directional ego networks.

      Directed Networks Arc Classification Complex Networks Python
      HATA arc type classification: Silk, Bond, Local Bridge, Global Bridge on directed example network HATA arc classification on 4 directed networks: foodweb, citation, blogs, highschool HATA arc type proportions over time in Travian game networks HATA paper first page — IEEE Access 2020
      論文：Paper: Huang, C.-Y. & Chin, W. C. B. (2020). Distinguishing Arc Types to Understand Complex Network Strength Structures and Hierarchical Connectivity Patterns. IEEE Access, 8, 71021–71040. doi:10.1109/ACCESS.2020.2986017
      GitHub Repository → · MIT License

    • BCAT — Bounded Confidence and Adoption Threshold Model

      結合有界信心意見動態與採用門檻創新擴散的混合模擬模型，用於探索「最佳遊戲卻無人問津」現象。支援正規格子、小世界網絡、隨機網絡及無標度網絡四種拓撲。提供 Python 3 與 NetLogo 4.0.5 兩種實作。 A mixed opinion dynamics and innovation diffusion simulation model for exploring the "best game no one played" phenomenon. Supports Regular Lattice, Small-World, Random, and Scale-Free network topologies. Implementations available in Python 3 (with Tkinter GUI) and NetLogo 4.0.5.

      Opinion Dynamics Innovation Diffusion Agent-Based Model Python NetLogo
      BCAT correlation matrices across Regular Lattice, Small-World, Random, and Scale-Free networks BCAT simulation algorithm flowchart with opinion exchange and adoption decision phases BCAT GUI — opinion dynamics and adoption simulation with multiple charts BCAT paper first page — IEEE Access 2022
      論文：Paper: Wang, S.-W., Huang, C.-Y., & Sun, C.-T. (2022). Multiagent Diffusion and Opinion Dynamics Model Interaction Effects on Controversial Products. IEEE Access, 10, 115252–115270. doi:10.1109/ACCESS.2022.3218719
      GitHub Repository → · MIT License

    • SRAC-Agent

      演化空間囚徒困境賽局中自我聲譽感知機制的模擬器。研究代理人如何評估自身適應度與聲譽並據此調整策略。支援 50×50 格網上 2,500 個代理人的即時視覺化模擬，提供 GUI 與 CLI 雙模式及批次實驗功能。 A Python 3 simulator for studying the influence of self-reputation awareness on agent behavior in evolutionary spatial Iterated Prisoner's Dilemma (IPD) games. Simulates 2,500 agents on a 50×50 grid with real-time visualization, supporting both GUI and CLI modes with batch experiment capabilities.

      Game Theory Prisoner's Dilemma Evolutionary Computation Agent-Based Model Python
      SRAC-IPD initial random strategies on 50×50 cellular automata grid SRAC-IPD evolved strategies at generation 99 with SRAC agents enabled SRAC-Agent four key strategies dynamics — ALL-C, TFT, PAVLOV, ALL-D SRAC-Agent paper first page — PLOS ONE 2014
      論文：Paper: Huang, C.-Y. & Lee, C.-L. (2014). Influences of Agents with a Self-Reputation Awareness Component in an Evolutionary Spatial IPD Game. PLOS ONE, 9(6), e99841. doi:10.1371/journal.pone.0099841
      GitHub Repository → · MIT License

    • AED2 — AED Placement Optimization

      使用基因演算法最佳化自動體外心臟電擊去顫器（AED）的配置地點。基於臺北市 2010 年院外心跳停止（OHCA）案例資料，在超商網絡中找出最佳 AED 部署位置，以最大化 OHCA 存活率並提升成本效益。 A genetic algorithm for optimizing Automated External Defibrillator (AED) placement at convenience stores to maximize Out-of-Hospital Cardiac Arrest (OHCA) survival rates. Uses Taipei 2010 OHCA case data to identify optimal deployment locations with improved cost-effectiveness.

      Genetic Algorithm AED Placement Public Health Optimization
      Taipei City maps: (a) fire stations and OHCA cases, (b) current AED and 7-11 locations Density distribution comparison: (a) OHCA cases, (b) suggested AED placement locations AED2 optimization results: 49 stores in top 50 and 74 stores in top 10 across runs AED2 paper first page — Applied Geography 2012
      論文：Paper: Tsai, Y.-S., Ko, P. C.-I., Huang, C.-Y., & Wen, T.-H. (2012). Optimizing locations for the installation of automated external defibrillators (AEDs) in urban public streets through the use of spatial and temporal weighting schemes. Applied Geography, 35(1–2), 394–404. doi:10.1016/j.apgeog.2012.09.002
      GitHub Repository → · MIT License

    著作目錄 Publication List

    SCI / SSCI / EI 等級期刊論文

    註：Huang C.Y. 後面加上星號 * 表示本人是該篇期刊論文之通訊責任作者。

    長庚大學資訊工程學系正教授時期（2015.08 開始）

    1. Wang S.W., and Huang C.Y.* (2026) A Hybrid SVR-Based Framework for Cryptocurrency Price Forecasting and Strategy Backtesting. Applied Artificial Intelligence, 40(1), e2612793. https://doi.org/10.1080/08839514.2026.2612793. (SCI, IF: 4.3, Rank: 105/366 [27%] in Engineering, Electrical & Electronic)
    2. Wang S.W., Huang C.Y.*, and Sun C.T. (2022) Multiagent Diffusion and Opinion Dynamics Model Interaction Effects on Controversial Products. IEEE Access, 10, 115252-115270. (SCI, IF: 4.098, Rank: 52/266 [20%] in Engineering, Electrical & Electronic)
    3. Huang C.Y. and Chin W.C.B. (2020) Distinguishing Arc Types to Understand Complex Network Strength Structures and Hierarchical Connectivity Patterns. IEEE Access, 8, 71021-71040. (SCI, IF: 4.098, Rank: 52/266 [20%] in Engineering, Electrical & Electronic)
    4. Huang C.Y., Chin W.C.B., Fu Y.H., and Tsai Y.S. (2019) Beyond Bond Links in Complex Networks: Local Bridges, Global Bridges and Silk Links. Physica A: Statistical Mechnics and Its Applications, 536, 121027. (SCI, IF: 2.924, Rank: 26/85 [30%] in Physics, Multidisciplinary, EI)
    5. Huang C.Y., Chin W.C.B., Wen T.H., Fu Y.H., and Tsai Y.S. (2019) EpiRank: Modeling Bidirectional Disease Spread in Asymmetric Commuting Networks. Scientific Reports, 9:5415. (SCI, IF: 4.122, Rank: 12/64 [19%] in Multidisciplinary Sciences)
    6. Fu Y.H., Huang C.Y.*, and Sun C.T. (2017) A Community Detection Algorithm Using Network Topologies and Rule-Based Hierarchical Arc-Merging Strategies. PLoS One, 12(11), e0187603. (SCI, IF: 2.806, Rank: 15/64 [24%] in Multidisciplinary Sciences)
    7. Lan Y.C., Wen T.H., Chang C.C., Liu H.F., Lee P.F., Huang C.Y., Chomel B.B., and Chen Y.M.A. (2017) Indigenous Wildlife Rabies in Taiwan: Ferret Badgers, A Long Term Terrestrial Reservoir. BioMed Research International, vol. 2017, Article ID 5491640, 6 pages. (SCI, IF: 2.476 Rank: 67/160 [42%] in Biotechnology & Applied Microbiology)
    8. Fu Y.H., Huang C.Y.*, and Sun C.T. (2016) Using a Two-Phase Evolutionary Framework to Select Multiple Network Spreaders Based on Community Structure. Physica A: Statistical Mechnics and Its Applications, 461, 840-853. (SCI, IF: 2.243, Rank: 18/79 [23%] in Physics, Multidisciplinary, EI)
    9. Fu Y.H., Huang C.Y.*, and Sun C.T. (2015) Using Global Diversity and Local Topology Features to Identify Influential Network Spreaders. Physica A: Statistical Mechanics and Its Applications, 433, 344-355. (SCI, IF: 2.243, Rank: 18/79 [23%] in Physics, Multidisciplinary, EI)

    長庚大學資訊工程學系副教授時期

    1. Huang C.Y. (2015) An Agent-based Epidemic Simulation of Social Behaviors Affecting HIV Transmission among Taiwanese Homosexuals. Computational and Mathematical Methods in Medicine, vol. 2015, Article ID 867264, 10 pages. (SCI, IF: 0.887, Rank: 42/56 [75%] in Mathematical and Computational Biology)
    2. Lee C.L., Huang C.Y.*, Hsiao T.C., Wu C.Y., Chen Y.C, and Wang I.C. (2014) Impact of Vehicular Networks on Emergency Medical Services in Urban Aras. International Journal of Environmental Research and Public Health, 11(11), 11348-11370. (SCI, IF: 2.035, Rank: 101/225 [45%] in Environmental Sciences)
    3. Fu Y.H., Huang C.Y.*, and Sun C.T. (2014) Identifying Super-Spreader Nodes in Complex Networks. Mathematical Problems in Engineering, vol. 2014, Article ID 675713, 8 pages. (SCI, IF: 0.644, Rank 59/85 [70%] in Engineering, Multidisciplinary)
    4. Huang C.Y. and Wen T.H. (2014) Optimal Installation Locations for Automated External Defibrillators in Taipei 7-Elevens: Using GIS and a Genetic Algorithm with a New Stirring Operator. Computational and Mathematical Methods in Medicine, vol. 2014, Article ID 241435, 12 pages. doi:10.1155/2014/241435. (SCI, IF: 0.887, Rank: 42/56 [75%] in Mathematical and Computational Biology)
    5. Huang C.Y. and Lee C.L. (2014) Influences of Agents with a Self-Reputation Awareness Component in an Evolutionary Spatial IPD Game. PLoS One, 9(6), e99841. (SCI, IF: 3.057, Rank: 11/62 [18%] in Multidisciplinary Sciences)
    6. Huang C.Y. and Wen T.H. (2014) A Novel Private Attitude and Public Opinion Dynamics Model for Simulating Pluralistic Ignorance and Minority Influence. Journal of Artificial Societies and Social Simulation, 17(3), 8. (SSCI, IF: 1.101, Rank: 28/93 [31%] in Social Sciences, Interdisciplinary)
    7. Wang S.W., Huang C.Y.*, and Sun C.T. (2014) Modeling Self-perception Agents in an Opinion Dynamics Propagation Society. Simulation: Transactions of the Society for Modeling and Simulation International, 90(3), 238-248. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    8. Wang S.W., Huang C.Y.*, and Sun C.T. (2014) A Proposal for Smart Agents with Adjusting Self-Reputation Capability for Preventing Fraud in Multi-Agent Societies. Journal of Information Science and Engineering, 30(2), 313-332. (SCI, IF: 0.392, Rank: 133/143 [93%] in Computer Science, Information Systems)
    9. Huang C.Y.*, Wen T.H., and Tsai Y.S. (2013) FLUed: A Novel Four-Layer Model for Simulating Epidemic Dynamics and Assessing Intervention Policies. Journal of Applied Mathematics, vol. 2013, Article ID 325816, 20 pages. doi:10.1155/2013/325816. (SCI, IF: 0.834, Rank: 104/247 [43%] in Mathematics, Applied)
    10. Huang C.Y.*, Lee C.L., Wen T.H., and Sun C.T. (2013) A Computer Virus Spreading Model Based on Resource Limitations and Interaction Costs. The Journal of Systems and Software, 86(3), 801-808. (SCI, IF: 1.424, Rank: 31/105 [30%] in Computer Science, Theory and Methods)
    11. Huang C.Y.* and Sun C.T. (2012) Effects of Resource Limitations and Cost Influences on Computer Virus Epidemic Dynamics and Tipping Points. Discrete Dynamics in Nature and Society, vol. 2012, Article ID 473136, 15 pages. doi:10.1155/2012/473136. (SCI, IF: 0.646, Rank: 35/62 [57%] in Multidisciplinary Sciences)
    12. Tsai Y.S., Ko P.C.I., Huang C.Y., and Wen T.H. (2012) Optimizing Locations for the Installation of Automated External Defibrillators (AEDs) in Urban Public Streets Through the Use of Spatial and Temporal Weighting Schemes. Applied Geography, 35(1-2), 394-404. (SSCI, IF: 2.565, Rank: 10/77 [13%] in Geography)
    13. Huang C.Y.*, Tzou P.J., and Sun C.T. (2011) Collective Opinion and Attitude Dynamics Dependency on Informational and Normative Social Influences. Simulation: Transactions of the Society for Modeling and Simulation International, 87(10), 875-892. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    14. Huang C.Y.*, Wang S.W., and Sun C.T. (2011) Using Self-Aware Agents to Analyze Public Self-Consciousness in the Iterated Prisoner’s Dilemma. Simulation: Transactions of the Society for Modeling and Simulation International, 87(7), 600-615. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    15. Tsai Y.S., Huang C.Y., Wen T.H., Sun C.T., and Yen M.Y. (2011) Integrating Epidemic Dynamics with Daily Commuting Networks: Building a Multilayer Framework to Assess Influenza A (H1N1) Intervention Policies. Simulation: Transactions of the Society for Modeling and Simulation International, 87(5), 385-405. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)

    長庚大學資訊工程學系助理教授兼資訊中心教學服務組組長時期

    1. Tsai Y.S., Huang C.Y.*, and Sun C.T. (2011) Response to Wilson’s Note on “Influences of Resource Limitations and Transmission Costs on Epidemic Simulations and Critical Thresholds in Scale-Free Networks”. Simulation: Transactions of the Society for Modeling and Simulation International, 87(3), 267-270. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    2. Huang C.Y., Tsai Y.S., and Wen T.H. (2010) Simulations for Epidemiology and Public Health Education. Journal of Simulation. 4(1), 68-80. (SCI, IF: 1.164, Rank: 45/82 [55%] in Operations Research and Management Science, EI)
    3. Huang C.Y., Tsai Y.S., and Wen T.H. (2010) A Network-Based Simulation Architecture for Studying Epidemic Dynamics. Simulation: Transactions of the Society for Modeling and Simulation International. 86(5/6), 351-368. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    4. Tsai Y.S. and Huang C.Y.* (2010) Effects of Resources and Costs on Diffusion Dynamics. International Journal of Intelligent Information and Database Systems, 4(1), 19-42. (EI)
    5. Huang C.Y. and Tsai Y.S. (2010) Effects of Friend-Making Resources/Costs and Remembering on Acquaintance Networks. Physica A: Statistical Mechanics and Its Applications, 389(3), 604-622. (SCI, IF: 1.772, Rank: 23/79 [30%] in Physics, Multidisciplinary, EI)
    6. Huang C.Y., Tsai Y.S., Sun C.T., Hsieh J.L., and Cheng C.Y. (2009) Influences of Resource Limitations and Transmission Costs on Epidemic Simulation and Critical Thresholds in Scale-Free Networks. Simulation: Transactions of the Society for Modeling and Simulation International, 85(3), 205-219. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    7. Hsieh J.L., Huang C.Y.*, Sun C.T., Tsai Y.S., and Kao G.Y.M. (2009) Learning to Build Network-Oriented Epidemic Simulation Models in Epidemiology Education. International Journal of Simulation and Process Modelling, 5(1), 31-41. (EI)
    8. Huang C.Y. (2009) Teaching Epidemic Simulation and Policy-Making to Novice Researchers. International Journal of Instructional Media, 36(1), 107-117.
    9. Cheng C.Y., Huang C.Y.*, and Sun C.T. (2008) Mining Bridge and Brick Motifs from Complex Biological Networks for Functionally and Statistically Significant Discovery. IEEE Transactions on Systems, Man, and Cybernetics—Part B: Cybernetics, 38(1), 17-24. (SCI, IF: 2.361, Rank: 2/17 [12%] in Computer Science, Cybernetics, EI)
    10. Huang C.Y., Cheng C.Y., and Sun C.T. (2007) Bridge and Brick Network Motifs: Identifying Significant Building Blocks from Complex Biological Systems. Artificial Intelligence in Medicine, 41(2), 117-127. (SCI, IF: 1.960, Rank: 28/94 [30%] in Computer Science, Artificial Intelligence, EI)
    11. Huang C.Y., Sun C.T., Cheng C.Y., and Hsieh J.L. (2007) Bridge and Brick Motifs in Complex Networks. Physica A: Statistical Mechanics and Its Applications, 377(1), 340-350. (SCI, IF: 1.772, Rank: 23/79 [30%] in Physics, Multidisciplinary, EI)
    12. Hsieh J.L., Sun C.T., Kao Y.M.G., and Huang C.Y.* (2006) Teaching through Simulation: Epidemic Dynamics and Public Health Policies. Simulation: Transactions of the Society for Modeling and Simulation International, 82(11), 731-759. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    13. Chen D.J., Tsai M.J., and Huang C.Y.* (2006) UI Design Patterns Generator for Pervasive Device. WSEAS Transactions on Computers, 5(9), 2114-2121. (EI)
    14. Chen D.J., Tsai M.J., and Huang C.Y.* (2006) Visual Based Software Construction: Visual Requirement Authoring Tool and Visual Program Generator. WSEAS Transactions on Systems, 5(8), 1881-1888. (EI)

    元培科技大學資訊工程學系講師及助理教授兼系主任時期

    1. Huang C.Y., Sun C.T., and Chu Y.W. (2006) A Co-adaptive Approach to XCS Classifier Systems. WSEAS Transactions on Systems, 5(2), 388-394. (EI)
    2. Chu Y.W., Sun C.T., and Huang C.Y.* (2006) Regularity of Protein Secondary Structures and Its Prediction. WSEAS Transactions on Systems, 5(2), 380-385. (EI)

    交通大學資訊工程學系博士生暨中國科技大學資訊工程學系講師時期

    1. Huang C.Y., Hsieh J.L., Sun C.T., and Cheng C.Y. (2006) Teaching Epidemic and Public Health Policies through Simulation. WSEAS Transactions on Information Science and Applications, 3(5), 899-904. (EI)
    2. Huang C.Y., Sun C.T., Hsieh J.L., Chen Y.M.A., and Lin H. (2005) A Novel Small-World Model: Using Social Mirror Identities for Epidemic Simulations. Simulation: Transactions of The Society for Modeling and Simulation International, 81(10), 671-699. (SCI, IF: 0.640, Rank: 77/106 [73%] in Computer Science, Software Engineering, EI)
    3. Huang C.Y., Sun C.T., and Lin H.C. (2005) Influence of Local Information on Social Simulation in Small-World Network Models. Journal of Artificial Societies and Social Simulation, 8(4). (SSCI, IF: 1.101, Rank: 28/93 [31%] in Social Sciences, Interdisciplinary)
    4. Huang C.Y., Sun C.T., Hsieh J.L., and Lin H. (2004) Simulating SARS: Small-World Epidemiological Modeling and Public Health Policy Assessments. Journal of Artificial Societies and Social Simulation, 7(4). (SSCI, IF: 1.101, Rank: 28/93 [31%] in Social Sciences, Interdisciplinary)

    國際會議論文

    1. Huang C.Y. and Chin W.C.B. (2020) Hierarchical Arc Type Analysis (HATA) Algorithm: Incorporating Significant Direction Effects to Uncover Arc Strength in Complex Directed Networks. In Proceedings of the International School and Conference on Network Science (NetSci-X’20), Tokyo, Japan.
    2. Huang C.Y. and Chin W.C.B. (2018) Beyond Bond Links in Complex Networks: Local Bridges, Global Bridges and Silk Links. In Proceedings of the 6th International Conference on Information Technology: IoT and Smart City (ICIT’18), Hong Kong.
    3. Huang C.Y. (2018) Teaching Epidemic Policy-Making to Novice Researchers. In Proceedings of the 2018 International Conference on Education, Psychology, and Learning (ICEPL’18), Nagoya, Japan.
    4. Huang C.Y., Fu Y.H., and Sun C.T. (2018) A Fast Community Detection Algorithm. In Proceedings of the 20th International Conference on Computer Science, Cybersecurity and Information Technology (ICCSCIT’17), Tokyo, Japan.
    5. Huang C.Y. (2017) Influences of Self-Reputation Awareness Agents in an Evolutionary Spatial IPD Game. In Proceedings of the Tokyo 15th International Conference on Engineering & Technology, Computer, Basic & Applied Science (ECBA’17), Tokyo, Japan.
    6. Lee C.L., Huang C.Y., and Chen T.Y. (2017) Fast Conflict Detection for Two-Dimensional Packet Filters. In Proceedings of the 5th International Conference on Industrial Application Engineering (ICIAE’17), Kitakyushu, Japan.
    7. Fu Y.H., Huang C.Y.*, and Sun C.T. (2016) Using Network Topology and Rule-Based Strategy to Identify Community Structure in Social Networks. In Proceedings of the 4th International Conference on Industrial Application Engineering (ICIAE’16), Beppu, Japan.
    8. Huang C.Y. and Lee C.L. (2015) Self-Reputation Awareness Agents in Spatial IPD Game. In Proceedings of the 3rd International Conference on Industrial Application Engineering (ICIAE’15), Kitakyushu, Japan.
    9. Huang C.Y., Fu Y.H., and Sun C.T. (2014) Identify influential social network spreaders. In Proceedings of IEEE International Conference on Data Mining (ICDM’14), Shenzhen, China.
    10. Lee C.L., Huang C.Y., Hsiao T.C., Wu C.Y., Chen Y.C., and Wang I.C. (2014) Impact of Vehicular Ad Hoc Networks on Emergency Medical Services in Urban Areas. In Proceedings of 2014 Asia Global Land Project Conference (GLP’14), Taipei, Taiwan.
    11. Fu Y.H., Huang C.Y., and Sun C.T. (2014) Using Global Diversity and Local Features to Identify Influential Social Network Spreaders. In Proceedings of International Workshop on Curbing Collusive Cyber-gossips in Social Networks (C3’04) joint with IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM’14), Beijing, China.
    12. Wen T.H. and Huang C.Y. (2014) Simulating Epidemic Dynamics and Assessing Intervention Policies. In Proceedings of International Conference on e-Commerce, e-Administration, e-Society, e-Education, and e-Technology (e-CASE & e-Tech’14), Nagoya, Japan.
    13. Wen T.H., Tsai Y.S., Ko P.C.I., and Huang C.Y. (2013) Using a Modified Genetic Algorithm in Identify Locations for Automated External Defibrillators. In Proceedings of International Conference on e-Commerce, e-Administration, e-Society, e-Education, and e-Technology (e-CASE & e-Tech’13), Kitakyushu, Japan. (Best Paper Award)
    14. Huang C.Y. (2012) Self-Aware Intelligent Agents in the Prisoner’s Dilemma. In Proceedings of Shanghai International Conference on Social Sciences (SICSS’12), Shanghai, China. (Session Chair)
    15. Wen T.H, Tsai Y.S., and Huang C.Y. (2012) Integration of Spatial and Temporal Variations of OHCA Patients and Emergency Service Facilities for Evaluating Potential Locations of Automated External Defibrillators (AED) in High Populated Urban Settings. In Proceedings of Global Change, Adaptation and Risk Management (GeoInformatics’12), Hong Kong.
    16. Huang C.Y., Tsai Y.S., and Wen T.H. (2011) Learning through Network-Based Simulations for Epidemiology Education. In Proceedings of Shanghai International Conference on Social Sciences (SICSS’11), Shanghai, China.
    17. Huang C.Y., Tsai Y.S., and Wen T.H. (2011) A Multilayer Framework to Assess Influenza Intervention Policies. In Proceedings of International Conference on Future Computer Sciences and Application (ICFCSA’11), Hong Kong, 132-136.
    18. Huang C.Y., Wang S.W., and Sun C.T. (2011) Self-Aware Intelligent Agents in the Prisoner’s Dilemma. In Proceedings of International Conference on Future Computer Sciences and Application (ICFCSA’11), Hong Kong, 127-131.
    19. Huang C.Y., Wang S.W., and Sun C.T. (2011) Modeling Agent Self-Awareness, Individual Performance and Collaborative Behavior. In Proceedings of IEEE 9th World Congress on Intelligent Control and Automation (WCICA’11), Taipei, Taiwan, 759-763.
    20. Huang C.Y. (2010) Influence of Self-Aware Agents with Public Self-Consciousness in the Iterated Prisoner’s Dilemma. In Proceedings of 9th WSEAS International Conference on System Science and Simulation in Engineering (ICOSSSE’10), Iwate, Japan, 133-138.
    21. Tsai Y.S., Huang C.Y., Wen T.H., and Sun C.T. (2010) A Multilayer Epidemiological Model Integrating Daily Commuting Network. In Proceedings of 9th WSEAS International Conference on System Science and Simulation in Engineering (ICOSSSE’10), Iwate, Japan, 77-83.
    22. Huang C.Y. and Wen T.H. (2010) A Multilayer Epidemic Simulation Framework Integrating Geographic Information System with Traveling Networks. In Proceedings of IEEE 8th World Congress on Intelligent Control and Automation (WCICA’10), Jinan, China, 2002-2007.
    23. Huang C.Y., Tsai Y.S., Wen T.H., and Sun C.T. (2010) A Multilayer Epidemic Simulation Framework Integrating Geographic Information System with Traveling Networks. In Proceedings of 29th IASTED International Conference on Modelling, Identification and Control (MIC’10), Innsbruck, Austria, 357-363.
    24. Wen T.Z., Tsai Y.S., Huang C.Y., and Yen M.Y. (2009) Multi-Layer Epidemic Dynamics Simulation (MEDSIM) for Spatial Transmission of Acute Respiratory Diseases. In Proceedings of 2009 Biosurveillance and Biosecurity Workshop International Perspectives, Taipei, Taiwan, R.O.C.
    25. Wang S.W., Sun C.T., and Huang C.Y. (2009) A Study of Agents with Self-awareness for Collaborative Behavior. In Proceedings of 14th Portuguese Conference on Artificial Intelligence (EPIA’09), Aveiro, Portugal, 425-435.
    26. Huang C.Y., Tsai Y.S., and Sun C.T. (2009) Effects of Resource and Remembering on Social Networks. In Proceedings of 8th International Conference on Autonomous Agents and Multiagent Systems (AAMAS’09), Budapest, Hungary, 837-842.
    27. Tsai Y.S., Sun C.T., and Huang C.Y. (2008) Epidemic Dynamics and Thresholds in Agent-Based Simulations under Realistic Resources and Cost Conditions. In Proceedings of IEEE/WIC/ACM International Conference on Intelligent Agent Technology (WI-IAT’08), Sydney, Australia, 65-70.
    28. Huang C.Y., Sun C.T., Cheng C.Y., and Tsai Y.S. (2008) Resource, Costs and Epidemic Critical Thresholds in Scale-Free Social Networks. In Proceedings of IEEE 7th World Congress on Intelligent Control and Automation (WCICA’08), Chongging, China, 1874-1879.
    29. Huang C.Y., Sun C.T., Cheng C.Y., and Tsai Y.S. (2008) Resource Limitations, Transmission Costs and Critical Thresholds in Scale-Free Networks. In Proceedings of 7th International Conference on Autonomous Agents and Multiagent Systems (AAMAS’08), Estoril, Portugal, 1121-1128.
    30. Huang C.Y., Hsieh J.L., Sun C.T., and Shih F.M. (2007) Mining Domain Ontological Information from Online Publications. In Proceedings of 6thd WSEAS International Conference on E-Activities (E-ACTIVITIES’07), Puerto De La Cruz, Tenerife, Canary Islands, Spain, 153-158.
    31. Cheng C.Y., Huang C.Y., and Sun C.T. (2007) Combining Motifs and Small-World Properties to Explore Complex Networks in Local and Global Views, In Proceedings of 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing (WORLDCOMP’07), Las Vegas, Nevada, USA, 842-845.
    32. Huang C.Y., Cheng C.Y., and Sun C.T. (2007) Mining Bridge and Brick Network Motifs, In Proceedings of International Conference on Machine Learning and Data Mining (MLDM’07) Poster, Leipzig, Germany, 134-143.
    33. Sun C.T., Hsieh J.L., and Huang C.Y. (2006) Using Evolving Agents to Critique Subjective Music Compositions. In Proceedings of IEEE International Conference on Computational Intelligence and Security (CIS’06), Guangzhou, China, 474-480.
    34. Chen D.J., Tsai M.J., and Huang C.Y. (2006) Generating UI for Pervasive Devices Using Pattern-Based Approach. In Proceedings of 10th International Conference on Computers (CSCC’06), Athens, Greece, 837-843.
    35. Chen D.J., Tsai M.J., and Huang C.Y. (2006) Visual-Based Software Construction Methodology. In Proceedings of 10th International conference on Computers (CSCC’06), Athens, Greece, 831-836.
    36. Hsieh J.L., Sun C.T., and Huang C.Y. (2006) Implementing CASMIM for Epidemic Simulations. In Proceedings of First World Congress on Social Simulation (WCSS’06), Kyoto, Japan, 297-304.
    37. Huang C.Y., Sun C.T., Shih F.M., and Hsieh J.L. (2006) Mining Domain Ontological Information from Online Publications. In Proceedings of IADIS International Conference e-Society 2006, Dublin, Ireland, 433-440.
    38. Hsieh J.L., Sun C.T., and Huang C.Y. (2006) Using Evolving Agents to Critique Subjective Data: Recommending Music. In Proceedings of IEEE Congress on Evolutionary Computation (CEC’06), Vancouver, BC, Canada, 406-413.
    39. Huang C.Y., Hsieh J.L., Sun C.T., and Cheng C.Y. (2006) Teaching Epidemic Simulation and Policy-Making to Novice Researchers. In Proceedings of International Conference on Automatic Control, Modeling and Simulation (ACMOS’06), Prague, Czech Republic, 393-398.
    40. Cheng C.Y., Huang C.Y., Sun C.T., and Hsieh J.L. (2006) Bridge and Brick Network Motifs. In Proceedings of IEEE 6th World Congress on Intelligent Control and Automation (WCICA’06), Dalian, China, 1222-1226.
    41. Huang C.Y., Sun C.T., and Chu Y.W. (2005) Using a Coevolution Mechanism with a Dyna Architecture for Parameter Adaptation in XCS Classifier Systems. In Proceedings of International Conference on Computational Intelligence, Man-Machine Systems and Cybernetics (CIMMACS’05), Miami, Florida, USA, 173-178.
    42. Chu Y.W., Sun C.T., and Huang C.Y. (2005) Finding Regularity in Protein Secondary Structures using a Cluster-based Genetic Algorithm. In Proceedings of International Conference on Computational Intelligence, Man-Machine Systems and Cybernetics (CIMMACS’05), Miami, Florida, USA, 179-183.
    43. Sumodhee C., Hsieh J.L., Sun C.T., and Huang C.Y., and Chen Y.M.A. (2005) Impact of Social Behaviors on HIV Epidemic: A Computer Simulation View. In Proceedings of IEEE Computational Intelligence for Modelling Control and Automation (CIMCA’05), Vienna, Austria, 550-556.
    44. Hsieh J.L., Huang C.Y., Sun C.T., and Chen Y.M.A. (2005) Using the CAMIM Small-World Epidemic Model to Analyze Public Health Policies. In Proceedings of Western Multiconference on Health Sciences Simulation, New Orleans, LA, USA, 63-69.
    45. Huang C.Y. and Sun C.T. (2004) Self-Adaptive Routing Based on Learning Classifier Systems. In Proceedings of IEEE Congress on Evolutionary Computation (CEC’04), Portland, Oregon, USA, 678-682.
    46. Lin H.C., Huang C.Y., and Sun C.T. (2004) Influence of Local Information on Social Simulations under the Small-World Model, In Proceedings of IEEE Cyber Worlds, Tokyo, Japan, 356-360.
    47. Huang C.Y. and Sun C.T. (2004) Co-Adaptive Learning Classifier Systems Based on Coevolution within Dyna Architecture. In Proceedings of IEEE 5th World Congress on Intelligent Control and Automation (WCICA’04), Hangzhou, China, 2179-2183.
    48. Huang C.Y., Sun C.T., Yu C.H., and Chen C.F. (2004) Self-Adaptive Routing Method Based on Learning Classifier Systems. In Proceedings of IEEE 5th World Congress on Intelligent Control and Automation (WCICA’04), Hangzhou, China, 417-421.
    49. Yu C.H., Wu C.M., and Huang C.Y. (2004) A Study of Using Automatic Text Indexing to Analyze Web Browsing Behavior. In Proceedings of IEEE World Congress on Intelligent Control and Automation (WCICA’04), Hangzhou, China, 3991-3995.

    專章、學位及其它論文

    1. Wen T.H., Tsai Y.S., Huang C.Y., and Yen M.Y. (2009) Multi-Layer Epidemic Dynamics Simulation (MEDSim) for Spatial Transmission of Acute Respiratory Diseases. Intelligence and Security Informatics: Biosurveillance and Biosecurity, New York: West Publishing Co. (ISBN: 978-1-60317-007-9)
    2. 黃崇源，孫春在，謝吉隆，林鶴玲（2009）第17章─模擬非典：基於小世界網絡的傳染病模型和公共衛生政策評估。聖昭瀚，張軍，杜建國（編輯）社會科學計算實驗理論與應用，中國上海：上海三聯出版社（南京大學工程管理學院研究所課程教科書，2012年江蘇省第十二屆哲學社會科學優秀成果一等獎，在環境行為與環境管理研究領域獲得國內同行的高度評價）。
    3. Huang C.Y., Cheng C.Y., and Sun C.T. (2008) Resource and Remembering Influences on Acquaintance Networks. Lecture Notes in Artificial Intelligence (LNAI), 4953, 281-291.
    4. Huang C.Y., Cheng C.Y., and Sun C.T. (2008) Resource Limitations, Transmission Costs and Critical Thresholds in Scale-Free Networks. Lecture Notes in Artificial Intelligence (LNAI), 4953, 485-494.
    5. Sun C.T., Hsieh J.L., and Huang C.Y.* (2007) Using Evolving agents to Critique Subjective Music Compositions. Lecture Notes in Artificial Intelligence (LNAI), 4456, 336-346.
    6. Huang C.Y., Hsieh J.L., and Sun C.T. (2006) Evaluating Subjective Compositions by the Cooperation between Human and Adaptive Agents. Lecture Notes in Artificial Intelligence (LNAI), 4293, 974-984. (SCIE, IF:0.513, Rank: 53/70 [76%] in Computer Science, Theory and Methods, EI)
    7. Huang C.Y. (2005) Small-World Epidemiological Modeling and Public Health Policy Assessment: Using the Social Mirror Identity Concept and Local Information for Network-based Epidemic Simulations: National Chiao Tung University, Hsinchu, Taiwan. (Ph.D. Dissertation)
    8. Huang C.Y. and Sun C.T. (2004) Parameter Adaptation within Co-adaptive Learning Classifier Systems. Lecture Notes in Computer Sciences (LNCS), 3103, 774-784.
    9. 黃崇源，陳尚寬 (2002) 網際網路與資料庫的對話。青草湖社區大學E化工作坊，新竹市，台灣。
    10. Huang C.Y. (2000) Classifier System with Long Term Memory and Its Learning through Analogical Recognition: National Chiao Tung University, Hsinchu, Taiwan. (Master Thesis)

    國內外媒體投書及採訪

    1. Huang C.Y. (2025) The beginning of your adventure with an AGI thinking machine! Taipei Times.
    2. 黃崇源（2025）結交智能小幫手，結伴勇闖新世界。老松兒童45。
    3. Huang C.Y. (2025) Digging for gold or selling shovels? Taipei Times.
    4. 黃崇源（2025）誰說賣鏟子的人知道金礦在那裡？自由時報，自由廣場。
    5. 黃崇源（2024）從「老松國小校歌」談起。老松兒童43。
    6. Huang C.Y. (2023) Is ChatGPT actually intelligent? Taipei Times.
    7. 黃崇源（2023）願景相承，生生不息。老松兒童42。
    8. 黃崇源 (2021) 諾富特群聚事件升溫，學者揭兩大感染熱區。中國廣播公司新聞網。
    9. 黃崇源 (2021) 提升疫苗接種率，學者籲政府擴大接種對象。中國廣播公司新聞網。
    10. 黃崇源 (2021) 疫苗數量仍不足，學者憂無法堵缺口。中國廣播公司新聞網。
    11. 黃崇源 (2021) 國內疫苗施打在即，學者呼籲確定兩件事。中國廣播公司新聞網。
    12. 黃崇源 (2021) 學者研究疫苗施打率需7成以上，才有群體免疫。中國廣播公司新聞網。
    13. 黃崇源 (2021) 避免衝擊雙北與竹科，學者籲桃園抗疫要守住。中國廣播公司新聞網。
    14. Huang C.Y. (2021) A message to students. Taipei Times.
    15. 黃崇源 (2021) 流行病動態學教授給所有大學生的一封信。風傳媒。
    16. Huang C.Y. (2021) Taiwan’s pandemic history. Taipei Times.
    17. 黃崇源（2021）一起來寫抗疫光榮史。自由時報，自由廣場。
    18. Huang C.Y. (2021) Getting the truth about virus shots. Taipei Times.
    19. 黃崇源（2021）撥開副作用濃霧，正確看待接種計畫。自由時報，自由廣場。
    20. 黃崇源 (2020) 機場「3高病毒量」設施！教授：候機室、貴賓室、公共廁所。東森新聞。
    21. 黃崇源 (2020) 流行病學傳播預測，團隊：交通路徑關鍵。東森新聞。
    22. 黃崇源 (2020) 資工學者疊合疾病分布，交通網正相關高達80%。TVBS新聞台。
    23. 黃崇源 (2020) 通勤族注意！新冠肺炎傳播，專家列大台北「這5行政區」染疫高風險。中時新聞網。
    24. 黃崇源 (2020) 台北市大安區、新北板橋、中和、三重和新莊，感染風險最高。藝術生活新聞網。
    25. 黃崇源 (2020) 新冠病毒「通勤公司」！專家揭大台北5區高風險染疫。ETToday新聞雲。
    26. 黃崇源 (2020) 通勤族當心！新冠病毒易散播，台北「5區」為染疫高風險。TVBS新聞台。
    27. 黃崇源 (2020) 一屁股「坐走」病毒！學者：通勤、傳疫「高度」正相關。TVBS新聞台。
    28. 黃崇源 (2020) 搭北捷、公車戴口罩，雙北五大紅區曝。三立新聞網。
    29. 黃崇源 (2020) 病毒能「通勤」？專家曝大台北高風險區。中天新聞。
    30. 黃崇源 (2020) 通勤易散播新冠病毒，專家曝台北5區風險高。中國時報。
    31. 黃崇源 (2020) 雙北5大高風險區曝光，專家：通勤恐助長病毒傳播。今周刊。
    32. 黃崇源 (2020) 病毒傳播恐與通勤高度相關！專家曝大台北5高風險區。自由時報。
    33. 黃崇源 (2020) 國內新冠肺炎確診人數日日增，專家點出北北基5大高風險區。風傳媒。
    34. 黃崇源 (2020) 通勤易傳播病毒？！雙北5區高風險區。華視新聞。
    35. 黃崇源 (2020) 検疫指揮の「後藤新平はいないのか」台湾で揺らぐ「日本神話」新型肺炎対応に失望。日本產經新聞。
    36. 黃崇源 (2020) 只囤泡麵衛生紙是錯的！學者籲政府教育正確儲量。聯合報。
    37. 黃崇源 (2020) 學者研究：機場這3處，病毒量最高。聯合報。
    38. 黃崇源 (2020) 學者研究：機場3處，病毒量最高。經濟日報。
    39. 黃崇源 (2020) 機場3大地點，學者研究：病毒量最高。中時電子報。
    40. 黃崇源 (2020) 機場「3大高病毒量設施」曝光！學者研究：連流感病毒也多。ETtoday新聞雲。
    41. Huang C.Y. (2020) Academics should help people, not sow fear. Taipei Times.
    42. 黃崇源（2020）防疫，知識份子應有的責任絕非獵巫。風傳媒。
    43. Huang C.Y. and Chin W.C. (2020) Air travel significant to spread of COVID-19. Taipei Times.
    44. 黃崇源，陳威全（2020）陳部長沒說的另一半答案。聯合報，民意論壇。
    45. 黃崇源，陳威全（2020）塞翁失馬，焉知非福？台灣防疫做得最好！自由時報，自由共和國。
    46. 黃崇源（2020）佛系防疫vs. 嚴謹防疫/日醫療優 台用閉關爭時間。聯合報，民意論壇。
    47. Huang C.Y. and Chin W.C. (2020) How to keep infection clusters from happening. Taipei Times.
    48. 黃崇源，陳威全（2020）武漢肺炎進展到群聚、社區感染前，台灣可以怎麼做？自由時報，自由廣場。
    49. 黃崇源 (2015) 李登輝只能代表自己。旺報。

    國內研討會論文

    1. 陳禹杰，黃崇源（2021）使用流病風險指標評估新冠肺炎病毒封城策略成效，2021台灣網際網路研討會暨TANET & NCS全國計算機會議，東海大學，台中。
    2. 黃崇源（2019）流行傳染病鄉鎮市流行評估指標，第17屆台塑企業應用技術研討會，長庚大學，桃園，台灣。
    3. 黃崇源（2019）流行傳染病鄉鎮市流行評估指標，第17屆台塑企業應用技術研討會，長庚大學，桃園，台灣。
    4. 黃崇源（2018）流行傳染病評估指標，第16屆台塑企業應用技術研討會，明志科技大學，台灣。
    5. 賴誠信，黃崇源（2014）以基因演算法及時空間權重模式決定自動體外去顫器之台北市便利商店，2014年台灣地理資訊學會年會暨學術研討會，高雄，台灣。
    6. 許仁賢，黃崇源（2014）基因演算法尋找SHA1碰撞的最佳解，2014年資訊技術應用及管理研討會，義守大學，高雄，台灣。
    7. 賴誠信，黃崇源（2014）以基因演算法及時空間權重模式決定自動體外去顫器之台北市便利商店，2014年資訊技術應用及管理研討會，義守大學，高雄，台灣。
    8. 黃崇源，陳思穎（2013）探討在社群網站上使用者隱私認知的不一致─以Facebook Applications為例，2013年資訊科技應用國際學術研討會，中國科技大學湖口校區，新竹，台灣。
    9. 黃崇源，黃裕浩 (2012) 主動擴散式對等資源搜尋機制：透過資訊同步增進搜尋效率，第十七屆行動計算研討會，新北市三峽區大板根森林溫泉渡假村，新北市，台灣。
    10. 黃崇源，黃逢傑（2012）以基因演算法結合人口統計資訊配置自動體外去顫器—以台北市為例，2012台灣地理資訊年會暨學術研討會，逢甲大學，台中，台灣。
    11. 陳璽文，孫春在，黃崇源，溫在弘（2011）網路拓樸的遞移性：以傳染病的風險擴散為例，第二十八屆組和數學與計算理論研討會，澎湖科技大學，馬公市，澎湖，台灣。
    12. 黃崇源，黃裕浩 (2008) 主動擴散式對等資源搜尋機制：透過資訊同步增進搜尋效率，TAAI 2008 第十三屆人工智慧與應用研討會，淡江大學蘭陽校區，宜蘭，台灣。
    13. 鄭家胤，黃崇源，孫春在 (2008) 複雜網路之橋接式與磚式基調。生物資訊研討會，中華大學，新竹，台灣。
    14. 黃崇源，鄭家胤 (2006) 橋接式與磚式網絡基調。2006中華決策科學學會年會暨學術研討會，新竹市，台灣，101頁。
    15. 黃崇源，孫春在 (2006) 基於分類元系統之自適應路由路徑選擇機制。2006中華決策科學學會年會暨學術研討會，新竹市，台灣，102頁。
    16. 黃崇源，孫春在 (2006) 共適應學習分類元系統。2006中華決策科學學會年會暨學術研討會，新竹市，台灣，103頁。
    17. 黃崇源，孫春在，謝吉隆，陳宜民，林鶴玲 (2005) 小世界流行病學建模與公衛政策評估。健康與管理學術研討會論文摘要集，新竹市，台灣，87頁。
    18. 孫春在，史馥銘，黃崇源 (2005) 從線上論文中擷取領域本體資訊。海峽二岸圖書館服務發展與創新高層論壇，北京，中國。
    19. 黃崇源 (2001) 是否需要一份關於「電腦與網路」學程規劃指南？。全國社區大學教師研習會手冊，新竹市，台灣。

    研究計畫 Research Projects

    主持人

    1. 以地理資訊系統為基礎之人工智慧基因演算法暨時空權重雙模型來探尋自動體外心臟除顫器於都會便利商店之最佳設置點 科技部專題研究計畫 · 期間：109-110 · TWD$1,130,000
      MOST-109-2314-B-182-037 / NERPD2K0481
    2. 整合資訊熵值及局域拓樸特性來識別複雜網絡超級傳播者 科技部專題研究計畫 · 期間：107-108 · TWD$784,000
      MOST-107-2221-E-182-069 / NERPD2H0551
    3. 使用規則式拓樸策略來快速識別複雜網絡社群及其階層結構 科技部專題研究計畫 · 期間：106-107 · TWD$539,000
      MOST-106-2221-E-182-073 / NERPD2G0431
    4. 線上熟人社群網絡演化之交友資源與記憶的影響 科技部專題研究計畫 · 期間：105-106 · TWD$614,000
      MOST-105-2221-E-182-069 / NERPD2F0341
    5. 反覆式囚犯困局中可自我聲譽調整能力之智慧型代理人的影響 科技部專題研究計畫 · 期間：104-105 · TWD$821,000
      MOST-104-2221-E-182-047 / NERPD2E0351
    6. 最適新型流感交通阻絕策略之基因演算法優選與防疫成本效益分析 科技部專題研究計畫 · 期間：103-104 · TWD$500,000
      MOST-103-2221-E-182-052 / NERPD2D0541
    7. 基於規範性與資訊性社會影響之多代理人意見與態度動態模擬 國科會專題研究計畫 · 期間：102-103 · TWD$761,000
      NSC-102-2221-E-182-052 / NERPD2C0371
    8. 整合型計畫之子計畫一：應用地理空間資料探礦與知識發掘技術於自願性地理資訊之擷取—以賞鳥資料為例 國科會專題研究計畫 · 期間：101-102 · TWD$836,000
      NSC-101-2119-M-182-001 / NERPD2B0301
    9. 公我意識之自我覺察代理人對於反覆囚犯困局之合作現象的影響與提升 國科會專題研究計畫 · 期間：100-101 · TWD$449,000
      NSC-100-2221-E-182-058 / NERPD2A0471
    10. 台灣新型流感H1N1疫情之計量地理分析與時空傳播網絡監測平台 (2/2) 新興病毒感染研究中心 · 期間：100-101 · TWD$506,980
      CMRPD290012
    11. 建構「台灣通勤人口暨交通運輸網絡模型」探討新型流感傳播之最佳交通阻絕策略施行方式 國科會專題研究計畫 · 期間：99-100 · TWD$780,000
      NSC-99-2314-B-182-031 / NERPD290581
    12. 台灣新型流感H1N1疫情之計量地理分析與時空傳播網絡監測平台 (1/2) 新興病毒感染研究中心 · 期間：99-100 · TWD$498,580
      CMRPD290011
    13. 子計畫三：車用無線行動式智慧型P2P網路系統 長庚大學校內研究計畫 · 期間：98-99 · TWD$497,500
      UERPD280351
    14. 利用社會網絡式傳染病模擬系統以協助新型流感監測並提供公衛參考 (3/3) 新興病毒感染研究中心 · 期間：98-99 · TWD$565,498
      CMRPD260023
    15. 台灣專屬新型流感傳播動態電腦模擬系統暨疫苗、抗病毒藥劑、居家隔離檢疫政策成本效益及最佳實施策略評估分析 國科會專題研究計畫 · 期間：98-99 · TWD$900,000
      NSC-98-2314-B-182-043 / NERPD280521
    16. 台灣重大流行性傳染病之公衛政策、疫苗、特效藥等防疫策略之流行病學電腦模擬與評估 國科會專題研究計畫 · 期間：97-98 · TWD$570,000
      NSC-97-2221-E-182-046 / NERPD270491
    17. 主動擴散式P2P對等資源分享系統與搜尋演算法 長庚大學校內研究計畫 · 期間：97-98 · TWD$436,500
      UERPD270281
    18. 利用社會網絡式傳染病模擬系統以協助新型流感監測並提供公衛參考 (2/3) 新興病毒感染研究中心 · 期間：97-98 · TWD$506,980
      CMRPD260022
    19. 利用社會網絡式傳染病模擬系統以協助新型流感監測並提供公衛參考 (1/3) 新興病毒感染研究中心 · 期間：96-97 · TWD$578,580
      CMRPD260021
    20. 利用橋接式與磚式功能性基調分析探討實際複雜網絡的動態行為、設計原理與演化機制 國科會專題研究計畫 · 期間：96-97 · TWD$558,000
      NSC-96-2221-E-182-041 / NERPD260341
    21. 臺灣地區腸病毒疫情之停課措施、洗手與戴口罩政策成效模擬與評估 疾病管制局研究計畫 · 期間：96-97 · TWD$800,000
      DOH96-DC-1102 / PERPD260011
    22. 小世界流行病學建模與公共衛生政策之評估 國科會專題研究計畫 · 期間：95-96 · TWD$449,000
      NSC-95-2221-E-182-076 / NERPD250521

    共同主持人

    1. 輿論擴散傳播模型運用人工智慧深度學習機制之探討 科技部專題研究計畫 · 期間：109-110
      MOST-109-2221-E-992-069
    2. 建立全球傳染疾病的傳播風險預警架構：評估東亞區域的境外移入風險 科技部專題研究計畫——沙克爾頓計畫（突破研究型） · 期間：108-111
      MOST-108-2368-H-002-MY2
    3. 建立偵測時空群聚動態的分析方法：以追蹤傳染病擴散的傳播鏈為例 國科會專題研究計畫 · 期間：102-103
      NSC-102-2410-H-002-168
    4. 利用通用圖形處理器的多字串比對演算法之研究 國科會專題研究計畫 · 期間：102-103
      NSC-102-2221-E-182-034
    5. 台灣美沙酮病人自我管理即時互動手持行動系統 國科會專題研究計畫 · 期間：102-103
      NSC-102-2314-B-039-024
    6. 結合網絡應用程式強化藥物濫用危害防制預警及宣導功能 食品藥物管理局研究計畫 · 期間：102-102
      102TFDA-N-003
    7. 點對點網路中檔案分享效率之研究 國科會專題研究計畫 · 期間：99-100
      NSC-99-2221-E-182-053
    8. 總計劃：行動式P2P無線感測網路之行車路徑動態導航系統 長庚大學校內研究計畫 · 期間：98-99
      UERPD280331
    9. 改善無結構式點對點網路服務品質之研究 國科會專題研究計畫 · 期間：98-99
      NSC-98-2221-E-182-033
    10. 台灣登革熱疫情的計量地理分析與空間模擬 國科會專題研究計畫 · 期間：98-100
      NSC-98-2410-H-002-168-MY2
    11. 利用風險分析方法建立藥物濫用預測模式及其防制教材 疾病管制局研究計畫 · 期間：98-99
      DOH98-NNB-1048
    12. 台灣注射藥癮族群愛滋防治及減害計畫評估整合型計劃：探討影響藥癮愛滋減害計畫工作人員持續提供服務之相關因素調查 疾病管制局研究計畫 · 期間：98-99
      DOH98-DC-1501
    13. 建立登革熱疫情傳播網絡的時空風險模型 國科會專題研究計畫 · 期間：97-98
      NSC-97-2314-B002-180
    14. 利用整合式傳染病監測軟體以協助流行性感冒的監測 疾病管制局研究計畫 · 期間：95-96
      DOH95-DC-1406

    研究人員

    1. 疫災之風險管理及應變規劃研究 疾病管制局研究計畫 · 期間：98-99
      DOH98-DC-1006